About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5505710_5507486_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5505710 - 5507486
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAACTACG
5'SS Class:
weak_major
3'SS Sequence:
GTCTTCGGCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
GGTGCACAAACA
Flanking Amino Acid:
LRFGATINFTSVTYTCNEGF
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.3
59.6
44.9
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
63.1
0.29
1
61.5
40
Minor 5ss
44.5
-0.6
2.6
62.4
41.7
Minor BPS
42
-0.6
2.2
55.01
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035892
5494286 - 5508579
14294