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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5505788_5506654_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5505788 - 5506654
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTCCCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TGTTCTTGTATG
Flanking Amino Acid:
VAWDKVPFCEIIPCEPPPVI
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
74.4
36
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
79.5
0.66
0.8
74.1
29.9
Minor 5ss
37.3
-1.4
2.6
40.4
39.1
Minor BPS
49.8
-0.1
1.8
60.63
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029606
5494286 - 5508342
14057