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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5506762_5508151_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5506762 - 5508151
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGGACC
5'SS Class:
major
3'SS Sequence:
TTCATTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
AMGYKGVMVRGDSIFSFLRY
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
57.6
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77.9
0.63
1
82.6
32.7
Minor 5ss
26.6
-2.7
3.1
26.4
36.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018131
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029606
5494286 - 5508342
14057