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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5513081_5519114_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5513081 - 5519114
Intron Length:
6034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCCTCCTGAATC
Flanking Amino Acid:
SHSASFSRPRGNCGPLPQLP
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
60.9
0.32
1.5
62.53
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027794
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039551
5509690 - 5523865
14176