About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5518992_5519114_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5518992 - 5519114
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCGTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GGAGCTTTCACT
Flanking Amino Acid:
SHSASFSRPRGSCATSAFRF
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
68.4
0.41
1
65.5
36.1
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
49.9
0.08
1.9
66.05
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027794
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026853
5509690 - 5523865
14176