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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5520346_5521842_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5520346 - 5521842
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TATTTTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTATTTTCACT
Flanking Amino Acid:
GARASVVCDEGYKLNGRNLI
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.3
0.66
0.9
78.2
34.9
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
57.3
0.31
1.8
76.69
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027794
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026853
5509690 - 5523865
14176
ENSAPLT00000039551
5509690 - 5523865
14176