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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5526374_5526642_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5526374 - 5526642
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCG
5'SS Class:
major
3'SS Sequence:
GCTTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAC
U12 Branch Point Sequence:
TGTGCTTTACTT
Flanking Amino Acid:
WQPPLPSCVPVQCPEPQVVN
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.3
43.9
Major BPS
56.2
0.16
1.3
51.3
43.9
Major PPT
81.4
0.71
0.8
77.8
35.6
Minor 5ss
27.7
-2.6
2.9
32.5
42.3
Minor BPS
59.4
0.37
1.7
75.88
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025370
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029501
5525616 - 5538506
12891