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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5532164_5532254_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5532164 - 5532254
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCG
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TTTTTGCCAACT
Flanking Amino Acid:
WQPPLPSCVPVQCSVPQTEG
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
62.3
43.9
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
86.3
0.82
0.8
77.7
36.7
Minor 5ss
27.7
-2.6
2.9
32.5
42.3
Minor BPS
48.3
-0
2.5
80.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025370
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020883
5531647 - 5538506
6860