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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5532871_5533099_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5532871 - 5533099
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGAGCT
5'SS Class:
major
3'SS Sequence:
CGTTGTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
WTPSVPFCDKGCDPPPQITS
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
63.6
41.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.6
0.53
0.9
68.1
37.6
Minor 5ss
31.6
-2.1
3.6
39.7
45.7
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025370
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029501
5525616 - 5538506
12891
ENSAPLT00000020883
5531647 - 5538506
6860
ENSAPLT00000044219
5525616 - 5538506
12891