Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5533702_5534056_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5533702 - 5534056

Intron Length:

355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGAGTGCA

5'SS Class:

major

3'SS Sequence:

CAGCATTTCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TCTTGCTAATAT

Flanking Amino Acid:

TWSEAPSSCNKISCPDPVVG

Intron Amino Acid Position:

353

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

65.2

34.5

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

68.7

0.42

0.9

40.6

Minor 5ss

29.7

-2.3

3.1

38.1

40.6

Minor BPS

45.4

-0.2

2.3

68.56

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044219

5525616 - 5538506

12891

ENSAPLT00000029501

5525616 - 5538506

12891

ENSAPLT00000020883

5531647 - 5538506

6860