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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5535079_5535498_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5535079 - 5535498
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
TGTTTCTCCACA
Flanking Amino Acid:
IWNKPAPECKVVGCQHPQIE
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
55.3
0.16
2
72
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025370
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020883
5531647 - 5538506
6860
ENSAPLT00000044219
5525616 - 5538506
12891
ENSAPLT00000029501
5525616 - 5538506
12891