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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5535712_5536075_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5535712 - 5536075
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GAGTCTTTCACC
Flanking Amino Acid:
TWDGDVPFCEPIPCSPPPKI
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.4
65
42.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
34.5
-1.8
2.9
36.7
40.6
Minor BPS
57.4
0.22
1.8
63.97
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025370
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044219
5525616 - 5538506
12891
ENSAPLT00000029501
5525616 - 5538506
12891
ENSAPLT00000020883
5531647 - 5538506
6860