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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5536162_5537137_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5536162 - 5537137
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
CTGTTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTGACAAGAAAT
Flanking Amino Acid:
GSIANYTCDMGYRLIGNSQL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
59.7
46.7
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
73.8
0.54
0.9
68.9
36.2
Minor 5ss
36.8
-1.5
3
39.3
46
Minor BPS
43.9
-0.3
2
65.92
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025370
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020883
5531647 - 5538506
6860
ENSAPLT00000044219
5525616 - 5538506
12891
ENSAPLT00000029501
5525616 - 5538506
12891