Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5546339_5547465_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5546339 - 5547465

Intron Length:

1127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGTACCT

5'SS Class:

major

3'SS Sequence:

TTTTCCTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATGCAC

U12 Branch Point Sequence:

TTTTCCTTTGCA

Flanking Amino Acid:

GRPRLPASVQPPVGSACLEP

Intron Amino Acid Position:

708

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.1

57.9

40.9

Major BPS

49.4

-0

1.3

61.1

36.4

Major PPT

0.97

0.6

88.6

20.7

Minor 5ss

27.8

-2.5

3.3

40.1

45.5

Minor BPS

49.3

-0

3.6

83.52

Associated Gene:

Gene:

PFKFB2

Ensembl Gene ID:

ENSAPLG00000015863

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016579

5545740 - 5556466

10727