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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5547658_5549448_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5547658 - 5549448
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TGTCTCTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTCTCTGATCA
Flanking Amino Acid:
THRDKPSLNSNNVPASQSPA
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.8
0.47
1
70.4
40
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
52
0.06
1.7
66.5
39.4

Associated Gene:

Gene:
PFKFB2
Ensembl Gene ID:
ENSAPLG00000015863
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045723
5542023 - 5556446
14424
ENSAPLT00000016579
5545740 - 5556466
10727
ENSAPLT00000048505
5542023 - 5556466
14444