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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5553719_5554400_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5553719 - 5554400
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGCG
5'SS Class:
major
3'SS Sequence:
GTCTGTTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACGGAGT
Flanking Amino Acid:
DPEVIAANILEVKVSSPDYP
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
58.7
40.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.3
0.3
1.2
57.1
47.5
Minor 5ss
26.6
-2.7
3.1
29
38.3
Minor BPS
45.1
-0.3
2.3
74.34
42.1

Associated Gene:

Gene:
PFKFB2
Ensembl Gene ID:
ENSAPLG00000015863
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045723
5542023 - 5556446
14424
ENSAPLT00000016579
5545740 - 5556466
10727
ENSAPLT00000048505
5542023 - 5556466
14444