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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5598004_5598210_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5598004 - 5598210
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
ACACCCAAAATT
Flanking Amino Acid:
ARSKYPPKAAISSPVFGPRQ
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
85.7
0.8
0.8
80.6
31.5
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
46.6
-0.1
1.9
61.69
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015616
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016281
5597908 - 5604693
6786