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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5599266_5599889_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5599266 - 5599889
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGCTCATTGAAT
Flanking Amino Acid:
TKELDLHVYEGSNVPQGKST
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
88.8
0.87
0.7
81.3
36.4
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
57
0.3
1.8
74.58
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015616
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016281
5597908 - 5604693
6786