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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5600928_5601831_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5600928 - 5601831
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTGCAACTAACC
Flanking Amino Acid:
TLAVYLQVAGGDAEKVAELS
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
75.9
0.58
0.7
69.1
31.5
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.5
-0.2
2.1
63.41
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015616
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016281
5597908 - 5604693
6786