Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5602184_5602719_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5602184 - 5602719

Intron Length:

536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCACTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TTTCCCTCCACT

Flanking Amino Acid:

AGVQNAAASESSEQSSGSNA

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

1.3

75.3

40.8

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

72.8

0.51

0.8

65.8

28.6

Minor 5ss

32.3

-2

2.8

43.1

43.7

Minor BPS

62.7

0.48

86.08

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015616

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016281

5597908 - 5604693

6786