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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5602839_5603017_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5602839 - 5603017
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCCCTCCGAACA
Flanking Amino Acid:
VFKYRQLKRSDLVSVGSYRT
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
65.7
0.35
1
61.4
33.7
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
47.3
-0.2
1.8
57.95
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015616
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016281
5597908 - 5604693
6786