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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5604248_5604372_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5604248 - 5604372
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGAGGG
5'SS Class:
major
3'SS Sequence:
TGTTTAAATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCTGTTTAAAT
Flanking Amino Acid:
AAAPPGLGRAASSGDFVRIV
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
53.4
44
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.9
0.56
1
72
42
Minor 5ss
31.3
-2.1
3.2
38.9
46.2
Minor BPS
56.3
0.28
1.9
72.3
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015616
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016281
5597908 - 5604693
6786