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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5608800_5609198_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5608800 - 5609198
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCGT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAATTTTATTT
Flanking Amino Acid:
LSIKRKLEQCHNQNKCLCGQ
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
65.7
45.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
37.9
-1.4
3.1
51.2
45.1
Minor BPS
49.8
0.07
1.6
64.36
40.9

Associated Gene:

Gene:
IL19
Ensembl Gene ID:
ENSAPLG00000015612
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016266
5608548 - 5610406
1859