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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5644377_5644498_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5644377 - 5644498
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CCCACTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GCCTCCCCACTC
Flanking Amino Acid:
NPEWSEVSEEVKQLIRNLLK
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75.1
0.56
0.8
68.2
31.8
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
41.7
-0.6
2
47.61
42.3

Associated Gene:

Gene:
MAPKAPK2
Ensembl Gene ID:
ENSAPLG00000015379
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016022
5643577 - 5646633
3057