Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5644624_5644708_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5644624 - 5644708

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTCAC

5'SS Class:

major

3'SS Sequence:

CCCCCCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAT

U12 Branch Point Sequence:

ACGCGCTGATTC

Flanking Amino Acid:

MWSLGVIMYILLCGYPPFYS

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

65.7

40.2

Major BPS

63.8

0.34

1.2

54.7

43.1

Major PPT

0.41

0.9

61.3

27.8

Minor 5ss

37.4

-1.4

54.6

42.6

Minor BPS

39.9

-0.7

1.9

42.63

38.7

Associated Gene:

Gene:

MAPKAPK2

Ensembl Gene ID:

ENSAPLG00000015379

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016022

5643577 - 5646633

3057