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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5644785_5645147_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5644785 - 5645147
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
CTCTTTTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CTCTTTTCACCA
Flanking Amino Acid:
ATPCYTPYYVAPEVLGPEKY
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
79.3
0.66
0.8
73.7
35.6
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
47.6
-0.1
1.8
58
42.5

Associated Gene:

Gene:
MAPKAPK2
Ensembl Gene ID:
ENSAPLG00000015379
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016022
5643577 - 5646633
3057