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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5645439_5645896_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5645439 - 5645896
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGGGCC
5'SS Class:
major
3'SS Sequence:
CTTACTGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GCTTCCTTACTG
Flanking Amino Acid:
DRGDQAFTEREASEIMKSIG
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
60.3
40.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
76.8
0.6
0.9
73.3
37
Minor 5ss
36.1
-1.6
3.5
42
45
Minor BPS
62.1
0.24
1.7
63.65
44.7

Associated Gene:

Gene:
MAPKAPK2
Ensembl Gene ID:
ENSAPLG00000015379
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016022
5643577 - 5646633
3057