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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5683154_5687116_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5683154 - 5687116
Intron Length:
3963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
CATAAAGTAAAG
Flanking Amino Acid:
SGLPSLGRSNVCSNKLAMKD
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
78.5
0.64
0.7
73.5
24.6
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
36.7
-1.1
2.3
41.07
42.3

Associated Gene:

Gene:
DYRK3
Ensembl Gene ID:
ENSAPLG00000015340
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015983
5680534 - 5688852
8319