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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5689245_5689899_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5689245 - 5689899
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCGTTACA
Flanking Amino Acid:
RSNTAIKGSDRRKLRTDVAA
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.9
76.4
37.6
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
49.1
-0
2.3
71.53
40.4

Associated Gene:

Gene:
EIF2D
Ensembl Gene ID:
ENSAPLG00000014849
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015497
5689189 - 5700376
11188