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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5694563_5694774_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5694563 - 5694774
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CACGGCATACTT
Flanking Amino Acid:
QEAEDSRTPQEQMDALLSQC
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
38
-0.8
2.1
48.88
44.9

Associated Gene:

Gene:
EIF2D
Ensembl Gene ID:
ENSAPLG00000014849
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015497
5689189 - 5700376
11188