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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5695318_5696006_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5695318 - 5696006
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AAATGTTTAACT
Flanking Amino Acid:
LDIKKSSYKKFSKFLQCMQH
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
63.5
0.5
1.7
76.44
39.9

Associated Gene:

Gene:
EIF2D
Ensembl Gene ID:
ENSAPLG00000014849
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015497
5689189 - 5700376
11188