About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5697734_5698397_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5697734 - 5698397
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ACTACTTGAAGT
Flanking Amino Acid:
MVPLFQESGHKKGSILSSSE
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
81.1
0.7
0.8
81
31
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
50.1
0.08
1.8
67.71
43.1

Associated Gene:

Gene:
EIF2D
Ensembl Gene ID:
ENSAPLG00000014849
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015497
5689189 - 5700376
11188