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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5698488_5698590_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5698488 - 5698590
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTGCACCTAATG
Flanking Amino Acid:
TNELVDEANKNFVKVNAILC
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
48.8
-0.2
1.9
58.81
42.7

Associated Gene:

Gene:
EIF2D
Ensembl Gene ID:
ENSAPLG00000014849
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015497
5689189 - 5700376
11188