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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5700209_5700305_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5700209 - 5700305
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CATTATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTACCTAAAGT
Flanking Amino Acid:
QIHHLAKMLLEEYQLPRKYI
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76
0.58
1
69.1
41.2
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
62.6
0.47
2
84.56
42.1

Associated Gene:

Gene:
EIF2D
Ensembl Gene ID:
ENSAPLG00000014849
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015497
5689189 - 5700376
11188