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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5705121_5705502_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5705121 - 5705502
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TCTGTTCCCATT
Flanking Amino Acid:
LFKEMRKDGQVLFQKLPLTE
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
77.3
0.61
0.9
70.3
34.9
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
38.2
-0.8
2
55.24
42

Associated Gene:

Gene:
RASSF5
Ensembl Gene ID:
ENSAPLG00000014759
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015376
5704147 - 5716553
12407