About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5733673_5734397_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5733673 - 5734397
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTGTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCAAAT
U12 Branch Point Sequence:
CCCTCCCCAGCC
Flanking Amino Acid:
NLQFNNSIIERLSGAAPTPG
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
48.8
-0
1.2
55.2
38.9
Major PPT
82.3
0.73
0.8
77.6
31.2
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
43.2
-0.5
2.1
50.97
45.8

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890