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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5737325_5737547_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5737325 - 5737547
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
TGGCAGGTGACC
Flanking Amino Acid:
KQFRKARNCPRLGYNEEQIH
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
56.7
42.7
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
81.3
0.7
0.7
73.7
31.3
Minor 5ss
31
-2.2
2.8
32.6
34.4
Minor BPS
37.2
-1
2.5
48.78
41.3

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890