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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5739657_5739799_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5739657 - 5739799
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCCATCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCTCTCCATCT
Flanking Amino Acid:
EEVVGVRYRDPALDFPKFVP
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78
0.63
0.8
69.2
36.9
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
45.2
-0.2
2.1
65.56
44.9

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890