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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5740003_5740182_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5740003 - 5740182
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTTAATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
SHRIYIHPYNTTSKFLDAVF
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
67.8
43.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.2
0.86
0.8
85.7
33.4
Minor 5ss
34
-1.8
3.2
42.3
38.1
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890