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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5740363_5740514_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5740363 - 5740514
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
CTTGATGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTCCTCTTGATG
Flanking Amino Acid:
YELPVTCQLSAGLKDQLIPI
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66.6
39.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
68.3
0.41
1
61.5
39.7
Minor 5ss
32.7
-2
3.3
39
39.9
Minor BPS
54.5
-0
1.4
54.78
41.3

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890