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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5740626_5741080_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5740626 - 5741080
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCCTCCCCACA
Flanking Amino Acid:
FGGPRRNKETMYKITTEKPP
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
67.9
37.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
32.6
-2
3
41.8
37.9
Minor BPS
42.3
-0.6
2.1
57.29
42

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890