Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5742196_5742284_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5742196 - 5742284

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CCCCCCGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTCAC

U12 Branch Point Sequence:

GCGGCCTCACCG

Flanking Amino Acid:

IVRLFAVEETGSSKQKVLVM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

67.4

Major BPS

54.7

0.12

1.2

59.2

39.1

Major PPT

0.41

0.9

60.6

29.4

Minor 5ss

32.6

-2

3.2

45.3

Minor BPS

43.9

-0.6

43.77

47.7

Associated Gene:

Gene:

IKBKE

Ensembl Gene ID:

ENSAPLG00000014351

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014989

5733639 - 5743528

9890