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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5742426_5743157_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5742426 - 5743157
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
TTTCCTTTTTCT
Flanking Amino Acid:
TASVYKARNKKSGELVAVKV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
79.4
0.66
0.7
71.7
32.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
45
-0.3
3.6
81.46
40.1

Associated Gene:

Gene:
IKBKE
Ensembl Gene ID:
ENSAPLG00000014351
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014989
5733639 - 5743528
9890