Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5766600_5767487_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5766600 - 5767487

Intron Length:

888

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTATC

5'SS Class:

major

3'SS Sequence:

CTGTCTTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

GTGTTGTTAACC

Flanking Amino Acid:

VMRYLFAFLNHLSQFSEENM

Intron Amino Acid Position:

631

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

75.4

34.4

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

82.1

0.72

0.8

76.9

31.8

Minor 5ss

-1.5

2.9

51.4

39.2

Minor BPS

59.2

0.27

2.1

70.37

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034730

5752942 - 5849506

96565

ENSAPLT00000014378

5752942 - 5827196

74255