Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5774119_5775787_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5774119 - 5775787

Intron Length:

1669

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTGATCTCATCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

CTGTTCTGATCT

Flanking Amino Acid:

ESQRTDCSLASGRRSSTIRK

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

68.9

0.43

39.1

Minor 5ss

34.9

-1.7

3.5

48.2

47.9

Minor BPS

54.3

0.21

1.8

72.01

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014378

5752942 - 5827196

74255

ENSAPLT00000034730

5752942 - 5849506

96565