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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5817105_5848937_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5817105 - 5848937
Intron Length:
31833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATC
Flanking Amino Acid:
IIAEYDTQVKEIRAQLVEQL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85
0.79
0.9
79.9
37.7
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
71.7
0.66
1.7
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013735
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034730
5752942 - 5849506
96565