About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5854686_5855555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5854686 - 5855555
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCTTCCCACCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATGTCTAAACT
Flanking Amino Acid:
DLYSTDIPPTATVDFIGSCY
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
56.7
42.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.9
0.45
0.8
62.9
33.4
Minor 5ss
31
-2.2
2.8
32.6
34.4
Minor BPS
63.3
0.49
1.8
80.35
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028878
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028035
5854507 - 5858773
4267