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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5855634_5856792_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5855634 - 5856792
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGTTGCTCACTA
Flanking Amino Acid:
CKLKNIACLKCGNVVGYHVI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81
0.7
0.8
73.4
37.1
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
47.2
-0.2
2.2
64.09
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028878
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028035
5854507 - 5858773
4267