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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_589591_589946_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
589591 - 589946
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATTTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.4
0.73
0.7
81.7
30
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
66.1
0.59
1.7
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014679
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042203
588119 - 605600
17482
ENSAPLT00000042114
588119 - 607528
19410