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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_5922245_5923230_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5922245 - 5923230
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
TTGTCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTTTCTTGACT
Flanking Amino Acid:
PIGEKLRNLFRCSASRLKLF
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.2
0.63
0.8
70.7
36.1
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
81.1
1.06
1.1
90.53
33.5

Associated Gene:

Gene:
SLC26A9
Ensembl Gene ID:
ENSAPLG00000012289
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012827
5921982 - 5934959
12978